Showing : without Replicate • reset
1
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Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma edger timecourse without replicate voom
written 8.4 years ago by ▴ 10
0
votes
1
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777
views
BSmooth does give DMRs without no replicate data sets
bsmooth without replicate dimension
6.7 years ago nilaycan • 0
0
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3
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1.3k
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time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 6.7 years ago by 43k • written 6.7 years ago by • 0
1
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5
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3.7k
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steps to get up and down regulated genes using DESeq2
deseq2 without replicate no replicates
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
5
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6
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5.7k
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Analyzing data without replicates using DiffBind
diffbind bioconductor differential binding analysis without replicate chipseq
7.4 years ago Hesh ▴ 10
4
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5
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2.8k
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edgeR- DE analysis with no replicates
edger differential gene expression without replicate nested design help
updated 8.8 years ago by ★ 28k • written 8.8 years ago by • 0
3
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6
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1.7k
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Question about edgeR usage with one case and multiple controls
edgeR differential expression without replicate
8.8 years ago gavin.oliver • 0
0
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3
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1.6k
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to call differential peaks among 4 peaksets all together using DiffBind
diffbind without replicate
updated 9.0 years ago by ▴ 670 • written 9.0 years ago by • 0
2
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7
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3.1k
views
edgeR for with no Replicate
edger without replicate
updated 9.3 years ago by ▴ 900 • written 9.3 years ago by • 0
1
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1
reply
1.6k
views
edgeR for without Replicate
edger without replicate
updated 9.3 years ago by ★ 28k • written 9.3 years ago by • 0
0
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10
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5.3k
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DESeq2 analysis without Replicate
without Replicate deseq2
updated 3.7 years ago by 43k • written 9.3 years ago by • 0
11 results • Page 1 of 1
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Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati by Mei • 0
I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a…
Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0
Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k
It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…
Answer: DESeq2 by ATpoint ★ 4.8k
Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …
Comment: Package developing and interoperation with Bioconductor by slizchap • 0
Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.
Votes
Comment: plyranges: find exact GRanges match keeping metadata columns
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin
Comment: ComBat with repeated measures
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