Bioconductor Without Replicate

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limma edger timecourse without replicate voom

written 9.2 years ago by Camila Orellana ▴ 10

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991

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bsmooth without replicate dimension

7.6 years ago nilaycan • 0

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1.5k

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deseq2 time-series without replicate

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by bahlv • 0

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4.0k

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deseq2 without replicate no replicates

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by Tony • 0

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6.8k

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diffbind bioconductor differential binding analysis without replicate chipseq

8.2 years ago Hesh ▴ 10

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3.2k

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edger differential gene expression without replicate nested design help

updated 9.6 years ago by Aaron Lun ★ 29k • written 9.6 years ago by knipehf • 0

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2.1k

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edgeR differential expression without replicate

9.6 years ago gavin.oliver • 0

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1.8k

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diffbind without replicate

updated 9.9 years ago by Gord Brown ▴ 670 • written 9.9 years ago by yiweihe • 0

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3.5k

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edger without replicate

updated 10.2 years ago by Yunshun Chen ▴ 900 • written 10.2 years ago by Sushant Pawar • 0

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1.8k

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edger without replicate

updated 10.2 years ago by Aaron Lun ★ 29k • written 10.2 years ago by Sushant Pawar • 0

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5.8k

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without Replicate deseq2

updated 4.6 years ago by Michael Love 43k • written 10.2 years ago by Sushant Pawar • 0

11 results • Page 1 of 1

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Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Erik Wright ▴ 150

This has to do with the fact that some taxonomies reuse names at the same rank level. Common examples in the SILVA taxonomy are "Incertae S…

Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0

For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…

Answer: Subsetting data verses contrasts [DESeq2]? by ATpoint ★ 5.0k

This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you so much for your help! will try to proceed with the suggestion

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Comment: Are transformed values from rlog /vst log2 normalized counts?

Are transformed values from rlog /vst log2 normalized counts?

Answer: Bulk RNAseq analysis for

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

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