Showing : without Replicate • reset
1
vote
6
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3.7k
views
Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma edger timecourse without replicate voom
written 9.0 years ago by ▴ 10
0
votes
1
reply
916
views
BSmooth does give DMRs without no replicate data sets
bsmooth without replicate dimension
7.3 years ago nilaycan • 0
0
votes
3
replies
1.4k
views
time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 7.3 years ago by 43k • written 7.3 years ago by • 0
1
vote
5
replies
3.9k
views
steps to get up and down regulated genes using DESeq2
deseq2 without replicate no replicates
updated 7.5 years ago by 43k • written 7.5 years ago by • 0
5
votes
6
replies
6.4k
views
Analyzing data without replicates using DiffBind
diffbind bioconductor differential binding analysis without replicate chipseq
8.0 years ago Hesh ▴ 10
4
votes
5
replies
3.0k
views
edgeR- DE analysis with no replicates
edger differential gene expression without replicate nested design help
updated 9.4 years ago by ★ 29k • written 9.4 years ago by • 0
3
votes
6
replies
2.0k
views
Question about edgeR usage with one case and multiple controls
edgeR differential expression without replicate
9.4 years ago gavin.oliver • 0
0
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3
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1.8k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind without replicate
updated 9.6 years ago by ▴ 670 • written 9.6 years ago by • 0
2
votes
7
replies
3.4k
views
edgeR for with no Replicate
edger without replicate
updated 9.9 years ago by ▴ 900 • written 9.9 years ago by • 0
1
vote
1
reply
1.7k
views
edgeR for without Replicate
edger without replicate
updated 9.9 years ago by ★ 29k • written 9.9 years ago by • 0
0
votes
10
replies
5.6k
views
DESeq2 analysis without Replicate
without Replicate deseq2
updated 4.3 years ago by 43k • written 9.9 years ago by • 0
11 results • Page 1 of 1
Recent ...
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Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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